m_common.f90 File Reference

(16563)

The FishMet Model: Definition of global parameters and computational utilities. More...

Go to the source code of this file.

Data Types
type	commondata::stomach_emptying_pattern
	A data structure that defines the stomach emptying pattern as dependent on the temperature and the fish mass. More...
interface	commondata::cum2rate
	Public interface for the cum2rate function that calculates rate from raw cumulative array. Note that rate unit time is defined by the integer rate_unit argument (as default, per commondata::minute). For details see cum2rate_int() and cum2rate_r(). More...
interface	commondata::add_to_history
	Simple history stack function, add to the end of the stack. We need only to add components on top (end) of the stack and retain HISTORY_SIZE_SPATIAL elements of the prior history (for a spatial moving object). The stack works as follows, assuming 100 and 200 are added: [1 2 3 4 5 6 7 8 9 10] [2 3 4 5 6 7 8 9 10 100] [3 4 5 6 7 8 9 10 100 200]. More...
interface	commondata::last
	Return the last element of a history array with optional offset. More...
interface	commondata::oxygen_rate_std
	Function calculating standard oxygen consumption in rainbow trout based on the curve from Fig. 9 in Evans, D.O. (1990) Metabolic Thermal compensation by rainbow trout: effects on standard metabolic rate and potential usable power. Trans. Am. Fish. Soc. 119, 585–600. More...
interface	commondata::sgr
	Function for calculating specific growth rate. More...
interface	commondata::within
	Force a value within the range set by the vmin and vmax dummy parameter values. More...

Modules
module	commondata
	This module defines global parameters and general-level computational utilities.

Enumerations
enum
	Definition of time plot scale types for ::global_time_plots_unit_scale. More...
enum	{ show_p , show_t , show_pt }

Functions/Subroutines
impure character(len=:) function, allocatable	commondata::model_parameters_txt ()
	Produce a text string containing all global parameters of the model. More...
pure logical function	commondata::is_stress ()
	Calculate if stress factor grid is enabled. Stress is disabled if any of the stress parameters are not defined; this includes the stress suppression grid array or the stress intervention array. More...
elemental real(srp) function	commondata::logistic (X, A, C, R)
	Logistic function is defined by the equation. More...
elemental real(srp) function	commondata::michaelis_menten (x, r_max, x50)
	Michaelis-Meneten function: More...
elemental real(srp) function	commondata::midgut_temp_factor (temperature)
	Calculate temperature adjustment factor for the Michaelis-Menten absorption process in the midgut. The function is based on the cubic spline approcimation using the grid vectors defined by commondata::global_temp_factor_midgut_t and commondata::global_temp_factor_midgut_t. More...
elemental real(srp) function	commondata::feed_energy (feed_mass, gross_energy, is_adjust_water_uptake, water_uptake)
	Calculate the energy content of a feed mass. More...
elemental real(srp) function	commondata::energy_o2 (l_o2)
	Calculate the enegretic equivalent (kJ) of Oxygen uptake (l O2) Source: Rønnestad B291. More...
elemental real(srp) function	commondata::o2mass (vol_l)
	Calculate the mass of 1 dm3 (l) of Oxygen. More...
elemental real(srp) function	commondata::o2vol (mass_g)
	Calculate the volume of 1 dm3 (l) of oxygen. More...
elemental integer(long) function	commondata::rate2int (rate_min)
	The function converts rate per min to interval in seconds. More...
pure real(srp) function, dimension(:), allocatable	commondata::cum2rate_int (inarray, rate_unit)
	Given an in put array of cumulative sum, this function calculates the rate per unit time defined by the rate_unit argument (as default, per commondata::minute). This requires working on the appropriate difference values for each time interval. Note: This function version accepts integer array. More...
pure real(srp) function, dimension(:), allocatable	commondata::cum2rate_r (inarray, rate_unit)
	Given an in put array of cumulative sum, this function calculates the rate per unit time defined by the rate_unit argument (as default, per commondata::minute). This requires working on the appropriate difference values for each time interval. Note: This function version accepts real array (::srp). More...
pure real(srp) function, dimension(:), allocatable	commondata::blockrate (inarray, rate_unit)
	Calculate rate based on simple block data, only the block start and end values are considered. More...
pure real(srp) function, dimension(:), allocatable, private	commondata::sgr_blockrate (inarray, rate_unit, time_unit)
	Calculate an array of specific growth rate rate values based on simple block data,. More...
pure subroutine, private	commondata::add_to_history_i4 (history_array, add_this)
	Simple history stack function, add to the end of the stack. We need only to add components on top of the stack and retain commondata::history_size_spatial elements of the prior history (for a spatial moving object). The stack works as follows, assuming 100 and 200 are added: [1 2 3 4 5 6 7 8 9 10]; [2 3 4 5 6 7 8 9 10 100]; [3 4 5 6 7 8 9 10 100 200]. More...
pure subroutine, private	commondata::add_to_history_r (history_array, add_this)
	Simple history stack function, add to the end of the stack. We need only to add components on top of the stack and retain commondata::history_size_spatial elements of the prior history (for a spatial moving object). More...
pure subroutine, private	commondata::add_to_history_char (history_array, add_this)
	Simple history stack function, add to the end of the stack. We need only to add components on top of the stack and retain commondata::history_size_spatial elements of the prior history. More...
pure real(srp) function, private	commondata::last_in_history_r (history_array, offset)
	Return the last value in the array. Note that this function is especially useful for long nested objects, to avoid complex set. More...
pure integer function, private	commondata::last_in_history_i4 (history_array, offset)
	Return the last value in the array. Note that this function is especially useful for long nested objects, to avoid complex set. More...
pure character(len=:) function, allocatable, private	commondata::last_in_history_char (history_array, offset)
	Return the last value in the array. Note that this function is especially useful for long nested objects, to avoid complex set. More...
elemental real(srp) function, private	commondata::within_r (value_in, vmin, vmax)
	Force a value within the range set by the vmin and vmax dummy parameter values. If the value is within the range, it does not change, if it falls outside, the output force value is obtained as min( max( value, FORCE_MIN ), FORCE_MAX ) More...
elemental integer function, private	commondata::within_i (value_in, vmin, vmax)
	Force a value within the range set by the vmin and vmax dummy parameter values. If the value is within the range, it does not change, if it falls outside, the output force value is obtained as min( max( value, FORCE_MIN ), FORCE_MAX ) More...
pure real(srp) function, dimension(:), allocatable, private	commondata::oxygen_rate_std_spline (temperature)
	Function calculating standard oxygen consumption in rainbow trout based on the empirical curve defined by interpolation on the grid determined by two global arrays: More...
pure real(srp) function, private	commondata::oxygen_rate_std_ddpi (temperature)
	Function calculating standard oxygen consumption in rainbow trout based on the empirical curve defined by interpolation on the grid determined by two global arrays: More...
elemental real(srp) function	commondata::fcr (input_f, output_m)
	Function to calculate the FCR, feed conversion rate . More...
elemental real(srp) function	commondata::kg2g (kg)
	Convert kg to g. More...
elemental real(srp) function	commondata::g2kg (g)
	Convert g to kg. More...
elemental real(srp) function	commondata::kg2mg (kg)
	Convert kg to mg. More...
elemental real(srp) function	commondata::mg2kg (mg)
	Convert mg to kg. More...
elemental real(srp) function	commondata::mg2g (mg)
	Convert mg to g. More...
elemental real(srp) function	commondata::g2mg (g)
	Convert g to mg. More...
elemental real(srp) function	commondata::from_micro (mu_unit)
	Convert micro (\mu) unit to unit, e.g. from micro mol to mol Metric prefix micro = 10^-6: unit x 0.000 001. More...
elemental real(srp) function, private	commondata::sgr_r (weight1, weight2, time1, time2)
	Calculates specific growth rate following Houde & Schekter (1981): More...
elemental real(srp) function, private	commondata::sgr_i (weight1, weight2, time1, time2, time_unit)
	Calculates specific growth rate following Houde & Schekter (1981): More...
pure type(stomach_emptying_pattern) function	commondata::stomach_emptying_def_default ()
	Define the default stomach emptying data structure ::stomach_emptying_pattern in case the input data from a CSV file are absent. More...
impure character(len=:) function, allocatable	commondata::stomach_emptying_txt (is_raw_s)
	Show the stomach emptying data structure. More...
impure character(len=:) function, allocatable	commondata::stomach_transport_txt (adjust, format, show, prefix)
	Produce a formatted text string containing the adjusted stomach transport arrays commondata::global_transport_pattern_r and commondata::global_transport_pattern_t. More...

Variables
character(len= *), parameter, public	commondata::svn_version_global = '0.1_o'
character(len= *), parameter, public	commondata::program_title = "FishMet: the fish appetite and feeding model"
	Program title that appears on the main interface/window. More...
logical, parameter, public	commondata::is_debug = .TRUE.
	Logical flag that sets the DEBUG mode. When the program is running in the DEBUG mode, additional checks are done and more output is produced. More...
logical, parameter, public	commondata::is_stress_enable = .TRUE.
	Compile-time logical flag that defines if stress effects described by global_stress_factor_hour, global_stress_fact_suppress and global_stress_cost_smr. More...
real(srp), parameter, public	commondata::debug_warn_level = 0.75_SRP
	Warning level in the debugging mode. More...
integer, parameter, public	commondata::label_len = 24
	The default length of labels and similar text strings. More...
integer, parameter, public	commondata::file_name_len = 255
	The default length of the file name. More...
integer, parameter, public	commondata::minimum_filename_chars = 7
	The minimum length of a data file. Note that cancelled file name dialog returns a six-char random sequence. Hence the minimum file name > 7. More...
integer, parameter, public	commondata::hour =3600
	Global time constants, number of sec in hour and min. More...
integer, parameter, public	commondata::minute =60
integer, parameter, public	commondata::max_points_plot = 1000
	The maximum number of data points that are plotted for the model output arrays (squeezed arrays). More...
logical, parameter, public	commondata::is_progress_bar_gui = .TRUE.
	Global parameter defining if progress bar is printed in the GUI mode. More...
integer, parameter, public	commondata::gui_progress_bar_max = 100
	Maximum value (steps) in the progress bar (minimum is 0) More...
integer, parameter, public	commondata::gui_progress_bar_steps = 100
	Number of steps in the progress bar at the GUI mode. More...
character(len=1), parameter, public	commondata::prog_bar_char = "#"
	The symbol used for writing the progress bar in text mode. More...
integer, parameter, public	commondata::prog_bar_len = 42
	The length of the progress bar in text mode. More...
character, parameter, public	commondata::crlf = char(10)
integer(long), public	commondata::global_time_step
	Global variable that defines the current time step. More...
character(len= *), parameter, public	commondata::output_arrays_csv_file = "model_output_arrays"
	Default file base-name for saving model output arrays. More...
character(len= *), parameter, public	commondata::output_rate_data_csv_file = "model_rate_data"
	Default file base-name for saving model rate data. More...
character(len= *), parameter, public	commondata::output_dest_dir = ""
	Default output directory: all plot and data file will be saved into this directory by default (local directory) unless reconfigured via commondata::global_output_dest. More...
character(len=file_name_len), public	commondata::global_output_dest
	Output directory: all plot and output files will be saved into this directory, default value is set by output_dest_dir. Specifically, the following outputs are saved to the output_dest directory: More...
character(len= *), parameter, public	commondata::param_file_name_def = "parameters.cfg"
	Defines the name of the file that keeps global parameters. The parameter file contains the coupled pairs of the parameter name and its value. Comments can be added, normally separated by the # commet symbol. More...
character(len=file_name_len), public	commondata::global_param_file_name
	Defines the name of the file that keeps global parameters. This name is normally defined by the environment variable FFA_MODEL_PARAMETER_FILE that is processed in runtime::system_init(). If this environment variable is not set, the parameter file name is defined by the default param_file_name_def. More...
integer, parameter, public	commondata::max_food_items_index = 4000
	Maximum number of food items in the fish stomach, this is the maximum index for the food items array in the_fish::stomach object. More...
logical, public	commondata::verbose
	Global logical flag to suppress extra text diagnostics and messages, the "quiet mode" or the "verbose mode". If the parameter is TRUE, then verbose mode is activated. More...
@, public	commondata::scale_sec
@, public	commondata::scale_min
@, public	commondata::scale_hour
@, public	commondata::unscaled
integer, public	commondata::global_rate_interval
	Default rate discretization interval in minutes, this interval is used to plot the ingestion rate. More...
integer, public	commondata::global_run_model_hours
	Default duration of the model run in hours. Note that parameter file uses hours as unit. Conversion to time steps is done in simulate::total_timesteps(). More...
integer, public	commondata::global_day_starts_hour
	Default hour at which the "daytime" is normally started. This means, in particular, that at the start of the simulation day starts with the offset equal to this parameter value. More...
integer, public	commondata::global_run_model_feed_offset
	The offset (delay) to start feeding at the beginning of the simulation, Note that the parameter file uses minutes as the unit. More...
integer, public	commondata::global_hours_daytime_feeding
	Default duration of the day time in hours, night duration is defined as 24 - ::global_hours_day_feeding. Feeding activity occurs only during the day time and not during the night. More...
real(srp), public	commondata::global_body_mass
	Fish body mass, g, at the start of the simulation Configuration file example: More...
real(srp), public	commondata::global_stomach_mass
	Fish stomach mass, max. filling capacity. Configuration file example: More...
real(srp), public	commondata::global_midgut_mass
	Fish mid-gut mass capacity, max. filling capacity. Configuration file example: More...
logical, public	commondata::global_stomach_midgut_mass_is_automatic
	Logical flag that specifies that the stomach and midgut mass (capacity) are automatically recalculated based on the body mass global_body_mass, possibly overriding the parameter values set by global_stomach_mass and global_midgut_mass. More...
real(srp), public	commondata::global_absorption_ratio
	Maximum absorption ratio relative to the original dry food item mass. Configuration file example: More...
integer, public	commondata::global_ingestion_delay_min
	Delay of ingestion, min. More...
integer, public	commondata::global_digestion_delay_min
	Delay of digestion, min. It is the delay of absorption after a food item was transmitted to the mid-gut. Any absorption can start only after the digestion delay. Configuration file example: More...
integer, public	commondata::global_maximum_duration_midgut_min
	The maximum duration a food item can be processed in the fish mid-gut, min. If it stays in the mid-gut for any longer time, it is excreted. Configuration file example: More...
real(srp), public	commondata::global_water_uptake
	Proportion of water uptake, relative of dry mass of the food item. Configuration file example: More...
real(srp), public	commondata::global_water_uptake_a
	Parameters of the logistic water uptake function that defines the temporary pattern of water uptake c /(1+a*e**(-r2*t)); where c is the upper limit of the mass, a and r are logistic parameters and e is natural logarithm base. Thus, water uptake dynamics is defined by two additional logistic parameters: Global_Water_Uptake_A and Global_Water_Uptake_R More...
real(srp), public	commondata::global_water_uptake_r
	Parameters of the logistic water uptake function that defines the temporary pattern of water uptake c /(1+a*e**(-r2*t)); where c is the upper limit of the mass, a and r are logistic parameters and e is natural logarithm base. Thus, water uptake dynamics is defined by two additional logistic parameters: Global_Water_Uptake_A and Global_Water_Uptake_R More...
integer, public	commondata::global_transport_dim
	Food transport in stomach: Dimensionality of the transport pattern in the stomach. More...
integer, dimension(:), allocatable, public	commondata::global_transport_pattern_t
	Food transport in stomach: Time grid array for interpolation. Configuration file example: More...
real(srp), dimension(:), allocatable, public	commondata::global_transport_pattern_r
	Food transport in stomach: Proportion of food mass left in stomach. Configuration file example: More...
real(srp), dimension(:), allocatable, public	commondata::global_temp_factor_midgut_t
	Temperature adjustment for absorption is controlled by the two parameters below that define the temperature adfjustment grid factor for the Michaelis-Menten equation: global_temp_factor_midgut_t and global_temp_factor_midgut_m This parameter provides the temperature grid for Michaelis-Menten absorption process. More...
real(srp), dimension(:), allocatable, public	commondata::global_stress_factor_hour
	The pattern of stress effect on the appetite is described by two grid arrays global_stress_factor_hour and global_stress_fact_suppress This global_stress_factor_hour defines the time grid for the stress pattern, h. More...
real(srp), dimension(:), allocatable, public	commondata::global_stress_fact_suppress
	The pattern of stress effect on the appetite is described by two grid arrays global_stress_factor_hour and global_stress_fact_suppress This global_stress_factor_hour defines the time grid for the stress pattern, h. More...
real(srp), public	commondata::global_stress_cost_smr
	Maximum value of the metabolic cost of stress in units of resting metabolic rate (SMR). The real metabilic cost scales depending on the time since stress intervention following the stress pattern described by the stress_grid_hour and stress_grid_fact grid. More...
real(srp), public	commondata::global_stress_activity_decr
	Maximum value of the suppressive effect of stress on baseline activity. The actual suppression of the baseline activity scales depending on the time since stress intervention following the stress pattern described by the stress_grid_hour and stress_grid_fact grid. More...
logical, public	commondata::global_stress_intervention_is_minutes
	Global logical flag setting the time unit for the stress intervention parameter array defined by global_stress_intervention_time. If set to TRUE, the stress parameter is set in minutes, otherwise in raw seconds. More...
integer(long), dimension(:), allocatable, public	commondata::global_stress_intervention_time
	The time of stress intervention is set by this array. It is the start points of stressful effects (s). More...
real(srp), dimension(:), allocatable, public	commondata::global_temp_factor_midgut_m
	Temperature adjustment for absorption is controlled by the two parameters below that define the temperature adfjustment grid factor for the Michaelis-Menten equation: global_temp_factor_midgut_t and global_temp_factor_midgut_m This parameter provides the temperature grid for Michaelis-Menten absorption process. More...
real(srp), public	commondata::global_transport_baseline_temperature
	The baseline temperature that applies to the stomach transport pattern defined by global_transport_pattern_t and global_transport_pattern_r. More...
real(srp), public	commondata::global_transport_baseline_fish_mass
	The baseline fish mass that applies to the stomach transport pattern defined by global_transport_pattern_t and global_transport_pattern_r. More...
type(stomach_emptying_pattern), public	commondata::global_stomach_emptying_pattern
	Default stomach emptying pattern. More...
real(srp), public	commondata::global_appetite_fish_night
	Fish appetite at night. This value is normally low because the fish do not feed at night. If the value is absent or negative, fish appetite does not reduce at night. More...
real(srp), public	commondata::global_appetite_stomach_threshold
	Protective appetite threshold for stomach: this is the maximum value of the the_fish::stomach::appetite_stomach() when the overall fish appetite level the_fish::fish::appetite() depends only on stomach filling. Thereby it can protect stomach from overfilling. Configuration file example: More...
real(srp), public	commondata::global_appetite_logist_a
	Logistic function parameter A for the appetite factor. See the_fish::appetite_func(). More...
real(srp), public	commondata::global_appetite_logist_r
	Logistic function parameter R for the appetite factor. See the_fish::appetite_func(). More...
real(srp), public	commondata::global_mid_gut_mm_r_max
	Michaelis-Meneten food absorption parameter in mid-gut, (see the_fish::michaelis_menten()) relative to the maximum mass of the food item, rate is per second (basic discrete step of the model). More...
real(srp), public	commondata::global_mid_gut_mm_k_m
	Michaelis-Meneten food absorption parameter in mid-gut, (see the_fish::michaelis_menten()) relative to the total mid-gut mass global_midgut_mass. More...
real(srp), public	commondata::global_energy_appetite_rate
	The steepness parameter of the Logistic energy component of appetite. More...
real(srp), public	commondata::global_energy_appetite_shift
	The shift parameter of the Logistic energy component of appetite. More...
real(srp), public	commondata::global_appetite_activity_factor
	Activity appetite factor determining how fish locomotor activity increases with increasing appetite. See the_fish::fish_activity_appetite_factor() More...
real(srp), public	commondata::global_ue_ze_factor
	A parameter defining branchial and urine (ZE+UE) energy consumption as a factor to SMR, e.g. 0.3 means (UE+ZE) = 0.3*SMR. More...
real(srp), public	commondata::global_ue_ze_ammonia_excretion
	A parameter defining branchial and urine (ZE+UE) energy consumption as a fixed ammonia excretion rate, micro (\mu) mol per g body mass per hour. More...
logical, public	commondata::global_is_ue_ze_fixed_rate
	Logical flag to choose how branchial and urinal (ZE+UE) energy loss is calculated. More...
real(srp), public	commondata::global_sda_absorp_rate_max
	Defines the specific dynamic action (SDA) that depends on the absorption rate. There are two parameters that define the linear relationship between absorption rate and SDA increase. This parameter defines the maximum absorption rate when the maximum SDA (defined by sda_energy_factor_max) is reached. More...
real(srp), public	commondata::global_sda_factor_max
	Defines the specific dynamic action (SDA) that depends on the absorption rate. There are two parameters that define the linear relationship between absorption rate and SDA increase. This parameter defines the maximum SDA reached at the maximum absorption rate defined by sda_absorption_rate_max. For example, this parameter equal to 2.0 means that SDA = SMR * 2.0 at the maximum absorption rate. More...
real(srp), dimension(:), allocatable, public	commondata::global_oxygen_grid_x_temp
	This parameter defines the X axis of the grid: temperature. See commondata::oxygen_rate_std() for details. If the array is not defined in the configuration file, use commondata::trout_oxygen_grid_x_temp Configuration file example: More...
real(srp), dimension(:), allocatable, public	commondata::global_oxygen_grid_y_o2std
	This parameter defines the Y axis of the grid: oxygen consumption. See commondata::oxygen_rate_std() for details. If the array is not defined in the configuration file, use commondata::trout_oxygen_grid_y_o2std Configuration file example: More...
real(srp), public	commondata::global_food_item_mass
	Standard mass of one food item. Configuration file example: More...
real(srp), public	commondata::global_food_gross_energy
	Gross energy content of the feed, MJ/kg (=kJ7g) Configuration file example: More...
real(srp), parameter, public	commondata::min_mass_toler = 0.0001_SRP
	Minimum mass of food item that counts as non-zero, a tolerance limit. More...
real(srp), public	commondata::global_temperature
	Ambient temperature Configuration file example: More...
real(srp), public	commondata::global_food_input_rate
	Standard rate of food item input, per minute. Configuration file example: More...
integer, dimension(2), public	commondata::global_interval_food_param
	Parameters of the food provisioning pattern: More...
logical, dimension(:), allocatable, public	commondata::global_interval_food_pattern
	Global food provisioning pattern, logical TRUE/FALSE for each time step. More...
character(len=file_name_len), public	commondata::global_food_pattern_file
	Global variable that keeps the file name for the food provisioning pattern see environ::food_provisioning_get_file() for more details. More...
logical, public	commondata::global_food_pattern_file_is_propagate
	Global logical flag that defines if the feed scheduling pattern defined by the global_interval_food_pattern file will propagate to all 24 h periods or applied just once to the first such period. More...
logical, public	commondata::global_food_pattern_file_is_steps
	Global logical flag that defines if the feed scheduling pattern defined by the global_food_pattern_file file represents the data for each time step (s) (if TRUE) or by minute (FALSE). The default value is FALSE i.e. data are given for each minute. More...
real(srp), public	commondata::global_baseline_activity_day
	Global baseline locomotor activity pattern (swimming speed) for each time step consists of two components: More...
real(srp), public	commondata::global_baseline_activity_night
real(srp), public	commondata::global_feeding_activity_factor
	Locomotor activity multiplier factor for the activity during the feeding time, i.e. when global_interval_food_pattern is TRUE. More...
character(len=file_name_len), public	commondata::global_stats_output_file
	Global variable keeping the file name for saving general simulation statistics. Data (rows) for each simulation run are normally appended to this file. The data format is CSV. See simulate::model_output_stats_row_csv() for some details. More...
character(len=file_name_len), public	commondata::global_stomach_emptying_matrix_file
	Global variable keeping the file name for the baseline stomach emptying matrix file that keeps the stomach emptying times for fish of different mass and at different temperatures. The file should be prepared in the CSV format and have the following structure: TODO. More...
logical, public	commondata::global_output_stats_is_long
	Define if the output stats are saved using the long or short format. In the first case, both the input parameters and the output stats are saved/appended into the CSV file. Note that the default value is TRUE. More...
character(len= *), parameter, public	commondata::def_stats_output_file = "fishmet_stats.csv"
	Default value of the general simulation statistics file defined in commondata::global_stats_output_file. More...
real(srp), parameter, public	commondata::base_e = 2.7182818284590451_SRP
	Natural logarithm base, e More...
real(srp), dimension(*), parameter	commondata::trout_oxygen_grid_x_temp = [ 0.0_SRP, 0.5_SRP, 5.0_SRP, 15.2_SRP, 20.1_SRP, 25.2_SRP, 26.2_SRP]
	Interpolation grid defining the function calculating standard oxygen consumption in rainbow trout based on the curve from Fig. 9 in Evans, D.O. (1990) Metabolic Thermal compensation by rainbow trout: effects on standard metabolic rate and potential usable power. Trans. Am. Fish. Soc. 119, 585–600-. More...
real(srp), dimension(*), parameter	commondata::trout_oxygen_grid_y_o2std = [38.0_SRP, 38.0_SRP, 40.6_SRP, 67.8_SRP, 94.6_SRP, 136.7_SRP, 145.9_SRP]
	Interpolation grid defining the function calculating standard oxygen consumption in rainbow trout based on the curve from Fig. 9 in Evans, D.O. (1990) Metabolic Thermal compensation by rainbow trout: effects on standard metabolic rate and potential usable power. Trans. Am. Fish. Soc. 119, 585–600-. More...
character(len= *), parameter, public	commondata::txt_sec ="s"
	Time scale abbreviation strings for Y axes of output plots. More...
character(len= *), parameter, public	commondata::txt_min ="min"
character(len= *), parameter, public	commondata::txt_hour ="h"

Detailed Description

The FishMet Model: Definition of global parameters and computational utilities.

Definition in file m_common.f90.

Enumeration Type Documentation

anonymous enum

anonymous enum

Enumerator
show_p
show_t
show_pt

Definition at line 2118 of file m_common.f90.