This data structure keeps the output values for each time step. It should normally be instantiated as an allocatable array of the size equal to the total number of time steps in the model run. More...

Collaboration diagram for simulate::output_arrays_step_def:

Public Attributes
integer	food_items_encountered
	Total cumulative number of food items encountered by (provided to) the fish. More...

integer	food_items_ingested_total
	Total cumulative number of food items ingested. More...

integer	food_items_not_ingested_total
	Total cumulative number of food items not ingested. More...

integer	n_food_items_stomach
	Number of food items in stomach. More...

integer	n_food_items_midgut
	Number of food items in midgut. More...

real(srp)	fish_appetite
	Overall appetite value as computed by the_fish::mid_gut::appetite(). More...

real(srp)	food_mass_total_stomach
	Total mass of food in the stomach. More...

real(srp)	food_mass_total_midgut
	Total mass of food in the midgut. More...

real(srp)	food_mass_absorb_total_midgut
	Total mass of food absorped in the mid-gut Note: not saved in output file, debug only. More...

real(srp)	food_mass_absorb_cumulate
	Cumulative mass absorped in the midgut. Note: not saved in output file, debug only. More...

real(srp)	food_mass_absorb_rate_instant
	Instantaneour absorption rate in the midgut. More...

real(srp)	oxygen_uptake_total
	Total oxygen uptake. More...

real(srp)	baseline_smr
	Baseline standard metabilic rate (SMR) More...

real(srp)	active_amr
	Active metabolic rate, excluding SMR. More...

real(srp)	branchial_ue_ze
	Branchaial and urinal metabolic rate. More...

real(srp)	digestion_cost_sda
	Specific dynamic action. More...

real(srp)	mass_evacuated_cumulative
	Cumulative mass of evacuated food remains, stepwise. More...

real(srp)	energy_balance_total
	Energy balance of the fish: the_fish::history_array_fish::energy_balance_curr. More...

real(srp)	body_mass_dynamics
	Body mass of the fish the_fish::history_array_fish::body_mass_current. More...

real(srp)	current_activity
	Activity of the fish calculated as `fishactivity_baseline() * fishactivity_appetite()` TODO: current activity is only used in fish_amr_locomotion_energy_cost() so may need a separate `fishactivity()` function. More...

Detailed Description

This data structure keeps the output values for each time step. It should normally be instantiated as an allocatable array of the size equal to the total number of time steps in the model run.

Definition at line 42 of file m_simulate.f90.

Member Data Documentation

◆ food_items_encountered

integer simulate::output_arrays_step_def::food_items_encountered

Total cumulative number of food items encountered by (provided to) the fish.

Definition at line 45 of file m_simulate.f90.

◆ food_items_ingested_total

integer simulate::output_arrays_step_def::food_items_ingested_total

Total cumulative number of food items ingested.

Definition at line 47 of file m_simulate.f90.

◆ food_items_not_ingested_total

integer simulate::output_arrays_step_def::food_items_not_ingested_total

Total cumulative number of food items not ingested.

Definition at line 49 of file m_simulate.f90.

◆ n_food_items_stomach

integer simulate::output_arrays_step_def::n_food_items_stomach

Number of food items in stomach.

Definition at line 51 of file m_simulate.f90.

◆ n_food_items_midgut

integer simulate::output_arrays_step_def::n_food_items_midgut

Number of food items in midgut.

Definition at line 53 of file m_simulate.f90.

◆ fish_appetite

real(srp) simulate::output_arrays_step_def::fish_appetite

Overall appetite value as computed by the_fish::mid_gut::appetite().

Definition at line 55 of file m_simulate.f90.

◆ food_mass_total_stomach

real(srp) simulate::output_arrays_step_def::food_mass_total_stomach

Total mass of food in the stomach.

Definition at line 57 of file m_simulate.f90.

◆ food_mass_total_midgut

real(srp) simulate::output_arrays_step_def::food_mass_total_midgut

Total mass of food in the midgut.

Definition at line 59 of file m_simulate.f90.

◆ food_mass_absorb_total_midgut

real(srp) simulate::output_arrays_step_def::food_mass_absorb_total_midgut

Total mass of food absorped in the mid-gut Note: not saved in output file, debug only.

Definition at line 62 of file m_simulate.f90.

◆ food_mass_absorb_cumulate

real(srp) simulate::output_arrays_step_def::food_mass_absorb_cumulate

Cumulative mass absorped in the midgut. Note: not saved in output file, debug only.

Definition at line 65 of file m_simulate.f90.

◆ food_mass_absorb_rate_instant

real(srp) simulate::output_arrays_step_def::food_mass_absorb_rate_instant

Instantaneour absorption rate in the midgut.

Definition at line 67 of file m_simulate.f90.

◆ oxygen_uptake_total

real(srp) simulate::output_arrays_step_def::oxygen_uptake_total

Total oxygen uptake.

Definition at line 69 of file m_simulate.f90.

◆ baseline_smr

real(srp) simulate::output_arrays_step_def::baseline_smr

Baseline standard metabilic rate (SMR)

Definition at line 71 of file m_simulate.f90.

◆ active_amr

real(srp) simulate::output_arrays_step_def::active_amr

Active metabolic rate, excluding SMR.

Definition at line 73 of file m_simulate.f90.

◆ branchial_ue_ze

real(srp) simulate::output_arrays_step_def::branchial_ue_ze

Branchaial and urinal metabolic rate.

Definition at line 75 of file m_simulate.f90.

◆ digestion_cost_sda

real(srp) simulate::output_arrays_step_def::digestion_cost_sda

Specific dynamic action.

Definition at line 77 of file m_simulate.f90.

◆ mass_evacuated_cumulative

real(srp) simulate::output_arrays_step_def::mass_evacuated_cumulative

Cumulative mass of evacuated food remains, stepwise.

Definition at line 79 of file m_simulate.f90.

◆ energy_balance_total

real(srp) simulate::output_arrays_step_def::energy_balance_total

Energy balance of the fish: the_fish::history_array_fish::energy_balance_curr.

Definition at line 82 of file m_simulate.f90.

◆ body_mass_dynamics

real(srp) simulate::output_arrays_step_def::body_mass_dynamics

Body mass of the fish the_fish::history_array_fish::body_mass_current.

Definition at line 85 of file m_simulate.f90.

◆ current_activity

real(srp) simulate::output_arrays_step_def::current_activity

Activity of the fish calculated as fishactivity_baseline() * fishactivity_appetite() TODO: current activity is only used in fish_amr_locomotion_energy_cost() so may need a separate fishactivity() function.

Definition at line 90 of file m_simulate.f90.

The documentation for this type was generated from the following file:

m_simulate.f90 (16564)

Public Attributes